Run cmdstan diagnostics for convergence and print the results in the screen Thin wrapper over cmdstanr cmdstan_diagnose() function

Source: R/bpc_exports.R

Run cmdstan diagnostics for convergence and print the results in the screen Thin wrapper over cmdstanr cmdstan_diagnose() function

check_convergence_diagnostics(bpc_object)

Arguments

bpc_object

a bpc object

Examples

# \donttest{
m<-bpc(data = tennis_agresti,
player0 = 'player0',
player1 = 'player1',
result_column = 'y',
model_type = 'bt',
solve_ties = 'none')
#> Running MCMC with 4 parallel chains...
#> 
#> Chain 1 finished in 3.5 seconds.
#> Chain 3 finished in 3.4 seconds.
#> Chain 2 finished in 3.5 seconds.
#> Chain 4 finished in 3.5 seconds.
#> 
#> All 4 chains finished successfully.
#> Mean chain execution time: 3.5 seconds.
#> Total execution time: 3.6 seconds.
check_convergence_diagnostics(m)
#> Processing csv files: /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/RtmphHd10I/file1af43d990293/reference/.bpcs/bt-202111110635-1-669bd8.csv, /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/RtmphHd10I/file1af43d990293/reference/.bpcs/bt-202111110635-2-669bd8.csv, /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/RtmphHd10I/file1af43d990293/reference/.bpcs/bt-202111110635-3-669bd8.csv, /private/var/folders/24/8k48jl6d249_n_qfxwsl6xvm0000gn/T/RtmphHd10I/file1af43d990293/reference/.bpcs/bt-202111110635-4-669bd8.csv
#> 
#> Checking sampler transitions treedepth.
#> Treedepth satisfactory for all transitions.
#> 
#> Checking sampler transitions for divergences.
#> No divergent transitions found.
#> 
#> Checking E-BFMI - sampler transitions HMC potential energy.
#> E-BFMI satisfactory for all transitions.
#> 
#> Effective sample size satisfactory.
#> 
#> Split R-hat values satisfactory all parameters.
#> 
#> Processing complete, no problems detected.
# }